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Launch CDeep3M on the AWS cloud
Launch Deep3m AWS CloudFormation link

Step 1) Launch the docker container on AWS
docker run -it --network=host --gpus all --entrypoint /bin/bash ncmir/cdeep3m

Step 2) Download image:
wget https://cildata.crbs.ucsd.edu/media/images/50451/50451_bin1.mrc

Step 3) Create the input image folder:
mkdir tifs

Step 4) Convert the mrc file to TIFF images:
mrc2tif 50451_bin1.mrc tifs/image

Step 5) Download the trained model file:
wget https://doi.org/10.7295/W9CDEEP3M3

Step 6) Unzip the compressed model file:
unzip $Model_file

Step 7) Run the prediction process
runprediction.sh --augspeed 1 --models 1fm $Model_file ~/tifs/ ~/predictions